COMD 802 - Neuroimaging: from image to inference
Overview
Schedule
  1. Jan 12, 2009: Overview.
  2. Jan 19, 2009: MRI physics: Image Acquisition (taught by Prof Paul Morgan).. Also available is Dr. Michael Schillaci's perspective on the same topic.
  3. Jan 26, 2009: MRI physics: Image Contrast (taught by Prof Paul Morgan). Also available is Dr. Michael Schillaci's perspective on the same topic.
  4. Feb 2, 2009: fMRI Paradigm Design.
  5. Feb 9, 2009: Meet at Brain Imaging Center to Collect Data
  6. Feb 16, 2009: Statistics and Thresholding. We will also analyze some data
  7. Feb 23, 2009: Spatial Processing I: Spatial Registration - realignment (motion correction), coregistration, normalization; Spatial interpolation - linear, spline, sinc functions
  8. Mar 2, 2009: Spatial Processing Continued II: Smoothing - filters, edge detection, gaussian blur; Advanced spatial concepts: homogeneity correction, motion related intensity changes, undistorting EPI images (using field maps).
  9. Mar 9, 2009: Spring break.
  10. Mar 16, 2009: Temporal Processing
  11. Mar 23, 2009: Detecting subtle changes in brain structure: Voxel Based Morphometry and Diffusion Tensor Imaging.
  12. Mar 30, 2009: Lesion symptom mapping
  13. Apr 6, 2009:Advanced methods Includes adaptation, sparse and resting state paradigms; analysis includes ICA, effective and functional connectivity; alternatives include ASL and perhaps msMRI.
  14. Apr 13, 2009:fMRI analysis using machine learning (Dr Svetlana V. Shinkareva).
  15. Apr 20, 2009:FSL vs SPM and alternative tools
  16. Apr 27, 2009: no class
Course Resources: Relevant Links:

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